Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobq/cobb/mind/para nucleotide binding domain protein | BACCOPRO_02630 | Not Available | Positive | 2565283 - 2566047 | 27943.1 |
| parb-like protein | BACCOPRO_02631 | Not Available | Positive | 2566074 - 2566970 | 33338.2 |
| hypothetical protein | BACCOPRO_02632 | Not Available | Positive | 2566983 - 2567774 | 29991.9 |
| transglycosylase slt domain protein | BACCOPRO_02633 | Not Available | Positive | 2567779 - 2569035 | 47398.1 |
| hypothetical protein | BACCOPRO_02634 | Not Available | Positive | 2569007 - 2569147 | 5242.32 |
| rela/spot family protein | BACCOPRO_02635 | Not Available | Positive | 2569144 - 2571411 | 86359.0 |
| transcriptional regulator, merr family | BACCOPRO_02636 | Not Available | Negative | 2571482 - 2571829 | 13613.6 |
| peptidase, m23 family | BACCOPRO_02637 | Not Available | Negative | 2571846 - 2572706 | 32069.6 |
| alanine--trna ligase | BACCOPRO_02638 | Not Available | Positive | 2572947 - 2575565 | 96982.9 |
| hypothetical protein | BACCOPRO_02639 | Not Available | Positive | 2575618 - 2575778 | 5853.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


