Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative amp nucleosidase | BACCOPRO_02600 | Not Available | Positive | 2533218 - 2533994 | 29295.4 |
| dna polymerase iii, delta subunit | BACCOPRO_02601 | Not Available | Positive | 2534005 - 2535021 | 38877.3 |
| hypothetical protein | BACCOPRO_02602 | Not Available | Positive | 2535310 - 2535432 | 5044.3 |
| dna-binding helix-turn-helix protein | BACCOPRO_02603 | Not Available | Positive | 2535765 - 2536214 | 17085.4 |
| oxidoreductase nad-binding domain protein | BACCOPRO_02604 | Not Available | Positive | 2536304 - 2537080 | 28278.7 |
| dihydroorotate dehydrogenase 1b | BACCOPRO_02605 | Not Available | Positive | 2537068 - 2537979 | 32285.3 |
| trna (guanine-n(1)-)-methyltransferase | BACCOPRO_02606 | Not Available | Negative | 2538134 - 2538814 | 25851.0 |
| dna ligase (nad+) | BACCOPRO_02607 | Not Available | Positive | 2538917 - 2540914 | 75394.8 |
| dihydrodipicolinate synthase family protein | BACCOPRO_02608 | Not Available | Positive | 2541022 - 2541288 | 9900.81 |
| dihydrodipicolinate synthase | BACCOPRO_02609 | Not Available | Positive | 2541150 - 2541914 | 28282.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


