Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha amylase, catalytic domain protein | BACCOPRO_02580 | Not Available | Positive | 2515308 - 2517320 | 77745.1 |
| hypothetical protein | BACCOPRO_02581 | Not Available | Positive | 2517324 - 2518478 | 44629.6 |
| hypothetical protein | BACCOPRO_02582 | Not Available | Positive | 2518538 - 2519134 | 22408.6 |
| hypothetical protein | BACCOPRO_02583 | Not Available | Positive | 2519162 - 2519566 | 14946.6 |
| proline--trna ligase | BACCOPRO_02584 | Not Available | Positive | 2519700 - 2521265 | 59873.8 |
| transcriptional regulator, arac family | BACCOPRO_02585 | Not Available | Negative | 2521348 - 2521860 | 19996.0 |
| hypothetical protein | BACCOPRO_02586 | Not Available | Negative | 2521960 - 2522247 | 10670.7 |
| hypothetical protein | BACCOPRO_02587 | Not Available | Positive | 2522410 - 2522637 | 8901.68 |
| tat pathway signal sequence domain protein | BACCOPRO_02588 | Not Available | Positive | 2522649 - 2523428 | 29426.2 |
| putative membrane protein | BACCOPRO_02589 | Not Available | Negative | 2523503 - 2524402 | 33259.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


