Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative alpha-1,2-mannosidase | BACCOPRO_02570 | Not Available | Positive | 2503190 - 2506342 | 118488.0 |
| iron-sulfur cluster repair di-iron protein | BACCOPRO_02571 | Not Available | Positive | 2506458 - 2507186 | 27956.6 |
| transglycosylase | BACCOPRO_02572 | Not Available | Positive | 2507364 - 2509691 | 88368.8 |
| hypothetical protein | BACCOPRO_02573 | Not Available | Positive | 2509848 - 2510669 | 31388.8 |
| putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase | BACCOPRO_02575 | Not Available | Negative | 2510664 - 2511089 | 16203.6 |
| hypothetical protein | BACCOPRO_02574 | Not Available | Positive | 2511037 - 2511180 | 5616.08 |
| 3-deoxy-d-manno-octulosonate cytidylyltransferase | BACCOPRO_02576 | Not Available | Positive | 2511193 - 2511954 | 28452.9 |
| peptidase m16 inactive domain protein | BACCOPRO_02577 | Not Available | Positive | 2511951 - 2513243 | 49546.3 |
| morn repeat protein | BACCOPRO_02578 | Not Available | Positive | 2513289 - 2514440 | 43781.1 |
| inositol monophosphatase family protein | BACCOPRO_02579 | Not Available | Positive | 2514437 - 2515231 | 29404.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


