Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02540 | Not Available | Negative | 2467134 - 2467733 | 22848.3 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_02541 | Not Available | Negative | 2467879 - 2470590 | 101397.0 |
| kinase, pfkb family | BACCOPRO_02542 | Not Available | Negative | 2471068 - 2471955 | 32347.0 |
| transporter, major facilitator family protein | BACCOPRO_02543 | Not Available | Negative | 2471965 - 2473128 | 41736.9 |
| glycosyl hydrolase family 32 | BACCOPRO_02544 | Not Available | Negative | 2473156 - 2475027 | 70126.7 |
| hypothetical protein | BACCOPRO_02545 | Not Available | Negative | 2475103 - 2477472 | 88688.5 |
| prolipoprotein diacylglyceryl transferase | BACCOPRO_02546 | Not Available | Negative | 2477621 - 2478448 | 31771.5 |
| diaminopimelate dehydrogenase | BACCOPRO_02547 | Not Available | Negative | 2478647 - 2479546 | 32345.9 |
| holliday junction dna helicase ruva | BACCOPRO_02548 | Not Available | Positive | 2479721 - 2480317 | 21381.3 |
| superoxide dismutase, mn/fe family | BACCOPRO_02549 | Not Available | Positive | 2480450 - 2481025 | 21878.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


