Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter, major facilitator family protein | BACCOPRO_02520 | Not Available | Positive | 2444484 - 2445716 | 44526.0 |
| yhch/yjgk/yial family protein | BACCOPRO_02521 | Not Available | Positive | 2445734 - 2446192 | 17324.7 |
| bnr/asp-box repeat protein | BACCOPRO_02522 | Not Available | Positive | 2446204 - 2447832 | 60064.8 |
| antioxidant, ahpc/tsa family | BACCOPRO_02523 | Not Available | Positive | 2448121 - 2449296 | 44080.7 |
| alpha-galactosidase | BACCOPRO_02524 | Not Available | Negative | 2449419 - 2451608 | 82829.9 |
| hypothetical protein | BACCOPRO_02525 | Not Available | Negative | 2451663 - 2453939 | 85278.2 |
| hypothetical protein | BACCOPRO_02526 | Not Available | Positive | 2454242 - 2455894 | 64583.4 |
| Tmrna,resume consensus sequence (at 88): attatctggcaacgaaaa | Not Available | Not Available | Positive | 2456048 - 2456442 | Not Available |
| hypothetical protein | BACCOPRO_02528 | Not Available | Negative | 2456516 - 2456695 | 6858.31 |
| lactate/malate dehydrogenase, nad binding domain protein | BACCOPRO_02529 | Not Available | Positive | 2456822 - 2457823 | 35781.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


