Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome recycling factor | BACCOPRO_02500 | Not Available | Positive | 2420440 - 2421000 | 20652.1 |
| ribosome small subunit-dependent gtpase a | BACCOPRO_02501 | Not Available | Positive | 2421083 - 2422021 | 35194.9 |
| peptidase, m28 family | BACCOPRO_02502 | Not Available | Positive | 2422101 - 2423126 | 38503.6 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_02503 | Not Available | Positive | 2423148 - 2424224 | 39527.1 |
| rnd transporter, hae1 family | BACCOPRO_02504 | Not Available | Positive | 2424237 - 2427272 | 112250.0 |
| outer membrane efflux protein | BACCOPRO_02505 | Not Available | Positive | 2427269 - 2428588 | 50446.6 |
| amino acid permease | BACCOPRO_02506 | Not Available | Positive | 2428709 - 2430376 | 60397.3 |
| 3'(2'),5'-bisphosphate nucleotidase | BACCOPRO_02507 | Not Available | Positive | 2430468 - 2431277 | 30167.0 |
| trka c-terminal domain protein | BACCOPRO_02508 | Not Available | Positive | 2431287 - 2432834 | 56719.9 |
| adenylyl-sulfate kinase | BACCOPRO_02509 | Not Available | Positive | 2432853 - 2433464 | 22648.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


