Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gscfa family protein | BACCOPRO_02460 | Not Available | Negative | 2379614 - 2380600 | 38699.3 |
| 1-deoxy-d-xylulose-5-phosphate synthase | BACCOPRO_02461 | Not Available | Positive | 2380691 - 2382601 | 70729.7 |
| trka n-terminal domain protein | BACCOPRO_02462 | Not Available | Positive | 2382598 - 2383938 | 49127.1 |
| 6-o-methylguanine dna methyltransferase, dna binding domain protein | BACCOPRO_02463 | Not Available | Positive | 2383968 - 2384537 | 21118.3 |
| hypothetical protein | BACCOPRO_02464 | Not Available | Negative | 2384587 - 2386041 | 55164.1 |
| hypothetical protein | BACCOPRO_02465 | Not Available | Positive | 2386115 - 2386801 | 25678.0 |
| hypothetical protein | BACCOPRO_02466 | Not Available | Positive | 2386804 - 2387622 | 31660.4 |
| putative rna methyltransferase, rsmd family | BACCOPRO_02467 | Not Available | Positive | 2387613 - 2388179 | 21914.0 |
| phospholipase d domain protein | BACCOPRO_02468 | Not Available | Negative | 2388139 - 2389575 | 55386.6 |
| hypothetical protein | BACCOPRO_02469 | Not Available | Negative | 2389705 - 2392578 | 107189.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


