Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | BACCOPRO_02440 | Not Available | Positive | 2351197 - 2352060 | 32615.2 |
| 6-phosphofructokinase | BACCOPRO_02441 | Not Available | Positive | 2352150 - 2353130 | 35368.6 |
| hypothetical protein | BACCOPRO_02442 | Not Available | Negative | 2353225 - 2354340 | 42379.5 |
| hypothetical protein | BACCOPRO_02443 | Not Available | Negative | 2354347 - 2355495 | 43012.1 |
| hypothetical protein | BACCOPRO_02444 | Not Available | Negative | 2355710 - 2355967 | 10057.4 |
| abc transporter, solute-binding protein | BACCOPRO_02445 | Not Available | Negative | 2356141 - 2357478 | 51548.0 |
| abc transporter, permease protein | BACCOPRO_02446 | Not Available | Negative | 2357475 - 2358269 | 28655.2 |
| abc transporter, permease protein | BACCOPRO_02447 | Not Available | Negative | 2358263 - 2359063 | 29877.1 |
| polyamine abc transporter, atp-binding protein | BACCOPRO_02448 | Not Available | Negative | 2359090 - 2360472 | 51518.1 |
| hypothetical protein | BACCOPRO_02449 | Not Available | Negative | 2360639 - 2361784 | 43323.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


