Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase | BACCOPRO_02420 | Not Available | Positive | 2336515 - 2338671 | 80923.2 |
| cyclic nucleotide-binding domain protein | BACCOPRO_02421 | Not Available | Positive | 2338685 - 2339248 | 21975.4 |
| nol1/nop2/sun family protein | BACCOPRO_02422 | Not Available | Negative | 2339271 - 2340713 | 53445.0 |
| hypothetical protein | BACCOPRO_02423 | Not Available | Negative | 2340725 - 2340910 | 6824.23 |
| hypothetical protein | BACCOPRO_02424 | Not Available | Positive | 2340934 - 2341089 | 6143.48 |
| thymidylate synthase | BACCOPRO_02425 | Not Available | Positive | 2341119 - 2341913 | 30730.8 |
| dihydrofolate reductase | BACCOPRO_02426 | Not Available | Positive | 2341944 - 2342459 | 19405.0 |
| transcriptional regulator, asnc family | BACCOPRO_02427 | Not Available | Negative | 2342468 - 2343001 | 20273.7 |
| iga peptidase m64 | BACCOPRO_02428 | Not Available | Positive | 2343076 - 2344359 | 48619.3 |
| acetyltransferase, gnat family | BACCOPRO_02429 | Not Available | Positive | 2344379 - 2344924 | 21157.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


