Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rmuc domain protein | BACCOPRO_02400 | Not Available | Positive | 2317171 - 2318475 | 50046.8 |
| hypothetical protein | BACCOPRO_02401 | Not Available | Negative | 2318491 - 2318640 | 5925.27 |
| ppx/gppa phosphatase family protein | BACCOPRO_02402 | Not Available | Negative | 2318618 - 2319535 | 34482.1 |
| polyphosphate kinase 1 | BACCOPRO_02403 | Not Available | Negative | 2319588 - 2321735 | 82495.4 |
| crispr-associated endonuclease cas3-hd | BACCOPRO_02404 | Not Available | Positive | 2321846 - 2324068 | 83917.8 |
| crispr-associated protein cas5, dvulg subtype | BACCOPRO_02405 | Not Available | Positive | 2324139 - 2324819 | 26675.9 |
| crispr-associated protein, csd1 family | BACCOPRO_02406 | Not Available | Positive | 2324816 - 2326579 | 66916.2 |
| hypothetical protein | BACCOPRO_02407 | Not Available | Positive | 2326601 - 2327485 | 32454.8 |
| crispr-associated protein cas4 | BACCOPRO_02408 | Not Available | Positive | 2327500 - 2328165 | 25827.0 |
| crispr-associated endonuclease cas1, dvulg subtype | BACCOPRO_02409 | Not Available | Positive | 2328162 - 2329184 | 38568.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


