Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate-semialdehyde dehydrogenase | BACCOPRO_02390 | Not Available | Positive | 2305808 - 2306818 | 37171.7 |
| hypothetical protein | BACCOPRO_02391 | Not Available | Negative | 2306950 - 2308011 | 40940.7 |
| alpha-l-fucosidase | BACCOPRO_02392 | Not Available | Negative | 2308024 - 2309373 | 51582.2 |
| hydrolase, nudix family | BACCOPRO_02393 | Not Available | Positive | 2309474 - 2309971 | 18984.2 |
| cytidine and deoxycytidylate deaminase zinc-binding region | BACCOPRO_02394 | Not Available | Negative | 2310489 - 2310956 | 17009.2 |
| hypothetical protein | BACCOPRO_02395 | Not Available | Negative | 2311015 - 2312148 | 42740.0 |
| chaperonin grol | BACCOPRO_02396 | Not Available | Negative | 2312259 - 2313896 | 58241.5 |
| chaperonin gros | BACCOPRO_02397 | Not Available | Negative | 2313931 - 2314203 | 9720.95 |
| hypothetical protein | BACCOPRO_02398 | Not Available | Negative | 2314216 - 2314380 | 6160.74 |
| tonb-dependent receptor | BACCOPRO_02399 | Not Available | Positive | 2314537 - 2317026 | 92406.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


