Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase or fumarate reductase, flavoprotein subunit | BACCOPRO_00230 | Not Available | Positive | 236164 - 238146 | 73599.6 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | BACCOPRO_00231 | Not Available | Positive | 238182 - 238937 | 27442.3 |
| dna protecting protein dpra | BACCOPRO_00232 | Not Available | Negative | 239052 - 240167 | 41109.7 |
| acyl-coa thioester hydrolase, ybgc/ybaw family | BACCOPRO_00233 | Not Available | Negative | 240164 - 240571 | 15686.9 |
| dihydrouridine synthase (dus) | BACCOPRO_00234 | Not Available | Positive | 240702 - 241628 | 35370.2 |
| hypothetical protein | BACCOPRO_00235 | Not Available | Negative | 241639 - 242913 | 49439.0 |
| dihydrodipicolinate reductase | BACCOPRO_00236 | Not Available | Positive | 242945 - 243751 | 29314.9 |
| signal peptidase i | BACCOPRO_00237 | Not Available | Positive | 243754 - 245178 | 55062.2 |
| signal peptidase i | BACCOPRO_00238 | Not Available | Positive | 245183 - 246100 | 34115.0 |
| wbqc-like protein | BACCOPRO_00239 | Not Available | Positive | 246132 - 246788 | 25605.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


