Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative acyl-[acyl-carrier-protein]-udp-n-acetylglucosamine o-acyltransferase | BACCOPRO_02380 | Not Available | Negative | 2290720 - 2291487 | 27699.3 |
| efflux transporter, outer membrane factor lipoprotein, nodt family | BACCOPRO_02381 | Not Available | Negative | 2291510 - 2292892 | 50562.8 |
| rnd transporter, hae1 family | BACCOPRO_02382 | Not Available | Negative | 2292903 - 2296127 | 117317.0 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_02383 | Not Available | Negative | 2296178 - 2297389 | 43625.1 |
| phosphate acetyl/butyryl transferase | BACCOPRO_02384 | Not Available | Positive | 2297805 - 2300093 | 84356.6 |
| nad(p)-specific glutamate dehydrogenase | BACCOPRO_02385 | Not Available | Positive | 2300506 - 2301840 | 49051.8 |
| hypothetical protein | BACCOPRO_02386 | Not Available | Positive | 2301913 - 2302140 | 8643.27 |
| abc transporter, atp-binding protein | BACCOPRO_02387 | Not Available | Negative | 2302147 - 2302797 | 23820.8 |
| thif family protein | BACCOPRO_02388 | Not Available | Negative | 2302802 - 2303527 | 26939.9 |
| transporter, cpa2 family | BACCOPRO_02389 | Not Available | Negative | 2303530 - 2305671 | 80400.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


