Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative alpha-l-fucosidase 1 | BACCOPRO_02320 | Not Available | Positive | 2233186 - 2234235 | 40363.9 |
| hypothetical protein | BACCOPRO_02321 | Not Available | Negative | 2234339 - 2235403 | 39489.1 |
| hypothetical protein | BACCOPRO_02322 | Not Available | Negative | 2235541 - 2236308 | 29428.9 |
| hypothetical protein | BACCOPRO_02323 | Not Available | Negative | 2236439 - 2237881 | 54217.0 |
| thump domain protein | BACCOPRO_02324 | Not Available | Positive | 2238294 - 2239808 | 57948.5 |
| peptidase, s9a/b/c family, catalytic domain protein | BACCOPRO_02325 | Not Available | Positive | 2239863 - 2242022 | 81861.2 |
| phosphoribosylamine--glycine ligase | BACCOPRO_02326 | Not Available | Positive | 2242065 - 2243339 | 45641.9 |
| hypothetical protein | BACCOPRO_02327 | Not Available | Positive | 2243350 - 2244285 | 34802.0 |
| snare-like domain protein | BACCOPRO_02328 | Not Available | Positive | 2244261 - 2244716 | 16753.8 |
| hypothetical protein | BACCOPRO_02329 | Not Available | Positive | 2244729 - 2245406 | 25725.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


