Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative 8-amino-7-oxononanoate synthase | BACCOPRO_02290 | Not Available | Positive | 2203092 - 2204282 | 44561.6 |
| hypothetical protein | BACCOPRO_02291 | Not Available | Positive | 2204295 - 2204963 | 25581.4 |
| biotin biosynthesis protein bioc | BACCOPRO_02292 | Not Available | Positive | 2204948 - 2205706 | 28645.4 |
| dethiobiotin synthase | BACCOPRO_02293 | Not Available | Positive | 2205703 - 2206344 | 24477.4 |
| peptidase, u32 family | BACCOPRO_02294 | Not Available | Negative | 2206489 - 2207799 | 49022.3 |
| hypothetical protein | BACCOPRO_02295 | Not Available | Negative | 2207901 - 2208209 | 10828.7 |
| hypothetical protein | BACCOPRO_02296 | Not Available | Negative | 2208289 - 2208411 | 4671.88 |
| tim-barrel protein, nifr3 family | BACCOPRO_02297 | Not Available | Positive | 2208510 - 2209493 | 36807.9 |
| oxidoreductase, aldo/keto reductase family protein | BACCOPRO_02298 | Not Available | Positive | 2209553 - 2210506 | 35484.3 |
| hypothetical protein | BACCOPRO_02299 | Not Available | Negative | 2210587 - 2211501 | 32087.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


