Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna uridine 5-carboxymethylaminomethyl modification enzyme gida | BACCOPRO_00220 | Not Available | Negative | 224571 - 226442 | 69874.1 |
| translation metalloprotein ybey | BACCOPRO_00221 | Not Available | Negative | 226782 - 227204 | 16006.0 |
| transporter gate domain protein | BACCOPRO_00223 | Not Available | Negative | 227266 - 228498 | 44240.1 |
| hypothetical protein | BACCOPRO_00222 | Not Available | Positive | 228497 - 229702 | 46665.4 |
| hypothetical protein | BACCOPRO_00224 | Not Available | Negative | 229822 - 229965 | 5744.13 |
| hypothetical protein | BACCOPRO_00225 | Not Available | Positive | 230121 - 231251 | 43724.1 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_00226 | Not Available | Positive | 231266 - 233212 | 73457.3 |
| pantetheine-phosphate adenylyltransferase | BACCOPRO_00227 | Not Available | Positive | 233269 - 233724 | 17171.8 |
| peptidase, s41 family | BACCOPRO_00228 | Not Available | Positive | 233726 - 235321 | 60133.0 |
| succinate dehydrogenase cytochrome b subunit, b558 family | BACCOPRO_00229 | Not Available | Positive | 235441 - 236130 | 25969.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


