Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter, dicarboxylate/amino acid:cation na+/h+ symporter family protein | BACCOPRO_02280 | Not Available | Positive | 2190674 - 2191840 | 41311.5 |
| hypothetical protein | BACCOPRO_02281 | Not Available | Positive | 2191816 - 2193132 | 50411.0 |
| hypothetical protein | BACCOPRO_02282 | Not Available | Negative | 2193140 - 2194600 | 55552.3 |
| hypothetical protein | BACCOPRO_02283 | Not Available | Positive | 2194950 - 2195276 | 12369.0 |
| hypothetical protein | BACCOPRO_02284 | Not Available | Positive | 2195276 - 2197273 | 76363.7 |
| cysteine--trna ligase | BACCOPRO_02285 | Not Available | Negative | 2197336 - 2198814 | 56062.9 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | BACCOPRO_02286 | Not Available | Positive | 2199087 - 2200172 | 41278.5 |
| hypothetical protein | BACCOPRO_02287 | Not Available | Positive | 2200419 - 2200796 | 13671.6 |
| biotin synthase | BACCOPRO_02288 | Not Available | Positive | 2200854 - 2201816 | 35209.6 |
| adenosylmethionine-8-amino-7-oxononanoate transaminase | BACCOPRO_02289 | Not Available | Positive | 2201806 - 2203095 | 47417.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


