Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gdsl-like protein | BACCOPRO_02260 | Not Available | Positive | 2169068 - 2170741 | 63213.6 |
| putative alpha-1,2-mannosidase | BACCOPRO_02261 | Not Available | Negative | 2170857 - 2173139 | 86459.9 |
| putative alpha-1,2-mannosidase | BACCOPRO_02262 | Not Available | Negative | 2173136 - 2175406 | 85095.3 |
| hypothetical protein | BACCOPRO_02263 | Not Available | Negative | 2175454 - 2175579 | 4762.93 |
| hypothetical protein | BACCOPRO_02264 | Not Available | Positive | 2175690 - 2175815 | 5076.39 |
| acyl carrier protein | BACCOPRO_02265 | Not Available | Positive | 2175935 - 2176171 | 8434.87 |
| beta-ketoacyl-acyl-carrier-protein synthase ii | BACCOPRO_02266 | Not Available | Positive | 2176188 - 2177453 | 44845.0 |
| ribonuclease iii | BACCOPRO_02267 | Not Available | Positive | 2177457 - 2178383 | 35386.1 |
| phosphofructokinase | BACCOPRO_02268 | Not Available | Negative | 2178485 - 2179495 | 35876.5 |
| hypothetical protein | BACCOPRO_02270 | Not Available | Negative | 2179508 - 2179672 | 6476.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


