Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma factor regulatory protein, fecr/pupr family | BACCOPRO_02250 | Not Available | Positive | 2155244 - 2156236 | 38509.1 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_02251 | Not Available | Positive | 2156361 - 2159756 | 127538.0 |
| susd family protein | BACCOPRO_02252 | Not Available | Positive | 2159769 - 2161349 | 60382.7 |
| hypothetical protein | BACCOPRO_02253 | Not Available | Positive | 2161440 - 2162575 | 43737.7 |
| hypothetical protein | BACCOPRO_02254 | Not Available | Positive | 2162589 - 2163485 | 33947.7 |
| hypothetical protein | BACCOPRO_02255 | Not Available | Positive | 2163488 - 2163670 | 6887.69 |
| hypothetical protein | BACCOPRO_02256 | Not Available | Negative | 2163868 - 2164146 | 11547.3 |
| hypothetical protein | BACCOPRO_02257 | Not Available | Negative | 2164191 - 2164334 | 5771.15 |
| glycosyl hydrolase family 3 n-terminal domain protein | BACCOPRO_02258 | Not Available | Positive | 2164595 - 2166916 | 85310.2 |
| gdsl-like protein | BACCOPRO_02259 | Not Available | Positive | 2166949 - 2169054 | 77957.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


