Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-ribosylhomocysteinase luxs | BACCOPRO_02220 | Not Available | Positive | 2117432 - 2117920 | 18295.0 |
| hypothetical protein | BACCOPRO_02221 | Not Available | Positive | 2118148 - 2121057 | 110848.0 |
| hypothetical protein | BACCOPRO_02222 | Not Available | Negative | 2121123 - 2122214 | 41760.2 |
| f5/8 type c domain protein | BACCOPRO_02223 | Not Available | Negative | 2122221 - 2124290 | 78408.0 |
| transcriptional regulator, arac family | BACCOPRO_02224 | Not Available | Positive | 2124470 - 2125282 | 31400.1 |
| ribosomal protein s15 | BACCOPRO_02225 | Not Available | Negative | 2125364 - 2125633 | 10425.6 |
| hypothetical protein | BACCOPRO_02226 | Not Available | Negative | 2125614 - 2125748 | 5296.45 |
| cation diffusion facilitator family transporter | BACCOPRO_02227 | Not Available | Negative | 2125745 - 2126740 | 36935.0 |
| hypothetical protein | BACCOPRO_02228 | Not Available | Positive | 2126912 - 2128084 | 45017.7 |
| gtp-binding protein typa | BACCOPRO_02229 | Not Available | Positive | 2128198 - 2130003 | 67537.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


