Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02210 | Not Available | Negative | 2107626 - 2108251 | 23594.4 |
| site-specific recombinase, phage integrase family | BACCOPRO_02211 | Not Available | Negative | 2108584 - 2109669 | 42323.2 |
| outer membrane efflux protein | BACCOPRO_02212 | Not Available | Positive | 2109686 - 2111068 | 52776.8 |
| auxiliary transport protein, membrane fusion protein (mfp) family protein | BACCOPRO_02213 | Not Available | Positive | 2111103 - 2112137 | 38894.4 |
| hypothetical protein | BACCOPRO_02215 | Not Available | Negative | 2112127 - 2112516 | 15024.9 |
| hypothetical protein | BACCOPRO_02214 | Not Available | Positive | 2112515 - 2113756 | 47970.0 |
| hypothetical protein | BACCOPRO_02216 | Not Available | Negative | 2113793 - 2114017 | 8990.98 |
| hypothetical protein | BACCOPRO_02217 | Not Available | Negative | 2114010 - 2114138 | 4764.78 |
| hypothetical protein | BACCOPRO_02218 | Not Available | Negative | 2114110 - 2116596 | 92639.9 |
| mta/sah nucleosidase | BACCOPRO_02219 | Not Available | Positive | 2116700 - 2117395 | 25295.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


