Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane efflux protein | BACCOPRO_02180 | Not Available | Positive | 2068727 - 2070229 | 57634.5 |
| hypothetical protein | BACCOPRO_02181 | Not Available | Negative | 2070247 - 2072805 | 93781.7 |
| sigma factor regulatory protein, fecr/pupr family | BACCOPRO_02182 | Not Available | Negative | 2072895 - 2073956 | 40027.8 |
| rna polymerase sigma-70 factor | BACCOPRO_02184 | Not Available | Negative | 2073946 - 2074476 | 21032.0 |
| hypothetical protein | BACCOPRO_02183 | Not Available | Positive | 2074462 - 2074665 | 7680.28 |
| sigma-54 interaction domain protein | BACCOPRO_02185 | Not Available | Positive | 2074741 - 2076108 | 50927.6 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_02186 | Not Available | Positive | 2076127 - 2077452 | 50287.2 |
| hypothetical protein | BACCOPRO_02187 | Not Available | Positive | 2077616 - 2078164 | 20275.0 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_02188 | Not Available | Positive | 2078212 - 2081358 | 115927.0 |
| hypothetical protein | BACCOPRO_02189 | Not Available | Positive | 2081383 - 2082867 | 55525.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


