Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02091 | Not Available | Negative | 2014224 - 2014349 | 4678.68 |
| ribosomal protein l31 | BACCOPRO_02090 | Not Available | Positive | 2014343 - 2014807 | 17876.6 |
| atp-dependent dna helicase recg | BACCOPRO_02092 | Not Available | Negative | 2014906 - 2017005 | 80085.3 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | BACCOPRO_02093 | Not Available | Negative | 2017053 - 2017715 | 24380.7 |
| dj-1 family protein | BACCOPRO_02094 | Not Available | Negative | 2017715 - 2018263 | 19152.5 |
| tonb family domain protein | BACCOPRO_02095 | Not Available | Negative | 2018265 - 2019125 | 30345.3 |
| transport energizing protein, exbd/tolr family | BACCOPRO_02096 | Not Available | Negative | 2019125 - 2019541 | 15812.5 |
| transporter, mota/tolq/exbb proton channel family protein | BACCOPRO_02097 | Not Available | Negative | 2019548 - 2020267 | 26044.2 |
| pyridoxine 5'-phosphate synthase | BACCOPRO_02098 | Not Available | Negative | 2020270 - 2020983 | 26256.3 |
| nad(+)/nadh kinase | BACCOPRO_02099 | Not Available | Positive | 2021092 - 2021976 | 32953.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


