Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_02030 | Not Available | Positive | 1960001 - 1961809 | 68128.4 |
| hypothetical protein | BACCOPRO_02031 | Not Available | Positive | 1961811 - 1963937 | 78006.9 |
| hypothetical protein | BACCOPRO_02032 | Not Available | Positive | 1964009 - 1965079 | 40905.5 |
| hypothetical protein | BACCOPRO_02033 | Not Available | Positive | 1965079 - 1965576 | 18607.2 |
| tonb-dependent receptor | BACCOPRO_02034 | Not Available | Positive | 1965573 - 1967630 | 77938.5 |
| periplasmic binding protein | BACCOPRO_02035 | Not Available | Positive | 1967655 - 1968794 | 41569.6 |
| hypothetical protein | BACCOPRO_02036 | Not Available | Positive | 1968795 - 1969101 | 10456.2 |
| iron chelate uptake abc transporter, fect family, permease protein | BACCOPRO_02037 | Not Available | Positive | 1969102 - 1969746 | 22772.3 |
| abc transporter, atp-binding protein | BACCOPRO_02038 | Not Available | Positive | 1969743 - 1970507 | 28282.5 |
| hypothetical protein | BACCOPRO_02039 | Not Available | Negative | 1970593 - 1971903 | 45309.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


