Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate dehydratase, type ii | BACCOPRO_02020 | Not Available | Negative | 1950884 - 1951297 | 15008.2 |
| tyrosine recombinase xerd | BACCOPRO_02021 | Not Available | Positive | 1951361 - 1952305 | 35699.2 |
| tetratricopeptide repeat protein | BACCOPRO_02022 | Not Available | Positive | 1952460 - 1954130 | 61401.7 |
| site-specific recombinase, phage integrase family | BACCOPRO_02023 | Not Available | Positive | 1954405 - 1955682 | 49663.2 |
| hypothetical protein | BACCOPRO_02024 | Not Available | Positive | 1955777 - 1956037 | 9891.32 |
| hypothetical protein | BACCOPRO_02025 | Not Available | Positive | 1956298 - 1956570 | 9777.6 |
| dna-binding protein hu | BACCOPRO_02026 | Not Available | Negative | 1956594 - 1956875 | 10337.6 |
| hypothetical protein | BACCOPRO_02027 | Not Available | Negative | 1956982 - 1957299 | 11514.9 |
| hypothetical protein | BACCOPRO_02028 | Not Available | Negative | 1957300 - 1958553 | 42804.6 |
| hypothetical protein | BACCOPRO_02029 | Not Available | Positive | 1958988 - 1959947 | 35581.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


