Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | BACCOPRO_02010 | Not Available | Positive | 1939974 - 1941535 | 60670.9 |
| hypothetical protein | BACCOPRO_02011 | Not Available | Negative | 1941640 - 1942563 | 34240.8 |
| hypothetical protein | BACCOPRO_02012 | Not Available | Positive | 1942669 - 1942812 | 5235.04 |
| hypothetical protein | BACCOPRO_02013 | Not Available | Negative | 1943049 - 1944155 | 42413.6 |
| hypothetical protein | BACCOPRO_02014 | Not Available | Negative | 1944169 - 1944576 | 15154.3 |
| glycosyl hydrolase family 20, catalytic domain protein | BACCOPRO_02015 | Not Available | Positive | 1945472 - 1947061 | 60795.0 |
| efflux abc transporter, permease protein | BACCOPRO_02016 | Not Available | Negative | 1947101 - 1948324 | 45330.5 |
| ribosome-binding factor a | BACCOPRO_02017 | Not Available | Negative | 1948321 - 1948656 | 12832.8 |
| o-methyltransferase | BACCOPRO_02018 | Not Available | Negative | 1948681 - 1949319 | 24678.9 |
| pyruvate kinase | BACCOPRO_02019 | Not Available | Negative | 1949323 - 1950783 | 54130.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


