Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-(glutamine-n5) methyltransferase, release factor-specific | BACCOPRO_02000 | Not Available | Positive | 1933092 - 1933931 | 31609.7 |
| regulatory protein recx | BACCOPRO_02001 | Not Available | Positive | 1933928 - 1934425 | 19221.0 |
| comf family protein | BACCOPRO_02002 | Not Available | Positive | 1934409 - 1935107 | 25986.8 |
| orotate phosphoribosyltransferase | BACCOPRO_02003 | Not Available | Positive | 1935233 - 1935868 | 23171.1 |
| hypothetical protein | BACCOPRO_02004 | Not Available | Positive | 1935973 - 1936401 | 16166.9 |
| argininosuccinate lyase | BACCOPRO_02005 | Not Available | Positive | 1936427 - 1937767 | 50632.3 |
| Trna-gly | Not Available | Not Available | Positive | 1937845 - 1937920 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 1937930 - 1938018 | Not Available |
| hypothetical protein | BACCOPRO_02008 | Not Available | Positive | 1938274 - 1939140 | 31879.5 |
| hypothetical protein | BACCOPRO_02009 | Not Available | Positive | 1939157 - 1939973 | 30379.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


