Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-asn | Not Available | Not Available | Positive | 1923263 - 1923336 | Not Available |
| cora-like protein | BACCOPRO_01991 | Not Available | Positive | 1923424 - 1924350 | 35969.6 |
| hypothetical protein | BACCOPRO_01992 | Not Available | Positive | 1924352 - 1924816 | 17951.5 |
| glutamate racemase | BACCOPRO_01993 | Not Available | Negative | 1924803 - 1925645 | 31296.7 |
| outer membrane protein | BACCOPRO_01994 | Not Available | Negative | 1925774 - 1926367 | 22491.1 |
| outer membrane protein | BACCOPRO_01995 | Not Available | Negative | 1926395 - 1926910 | 18920.0 |
| outer membrane protein assembly complex, yaet protein | BACCOPRO_01996 | Not Available | Negative | 1927039 - 1929687 | 101585.0 |
| di-trans,poly-cis-decaprenylcistransferase | BACCOPRO_01997 | Not Available | Negative | 1929696 - 1930427 | 27930.3 |
| hypothetical protein | BACCOPRO_01998 | Not Available | Negative | 1930452 - 1931879 | 52398.8 |
| riboflavin biosynthesis protein ribd | BACCOPRO_01999 | Not Available | Negative | 1932136 - 1933056 | 34471.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


