Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00190 | Not Available | Positive | 195557 - 195733 | 6827.51 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | BACCOPRO_00191 | Not Available | Negative | 195769 - 196230 | 17418.1 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | BACCOPRO_00192 | Not Available | Negative | 196241 - 197296 | 40354.7 |
| trna pseudouridine synthase b | BACCOPRO_00193 | Not Available | Negative | 197314 - 198018 | 26643.2 |
| putative undecaprenyl-diphosphatase uppp | BACCOPRO_00194 | Not Available | Negative | 198082 - 198885 | 28833.1 |
| hypothetical protein | BACCOPRO_00195 | Not Available | Negative | 198882 - 199151 | 9936.28 |
| efflux abc transporter, permease protein | BACCOPRO_00196 | Not Available | Negative | 199178 - 200044 | 32113.9 |
| methyltransferase domain protein | BACCOPRO_00197 | Not Available | Negative | 200041 - 200943 | 34748.7 |
| pspc domain protein | BACCOPRO_00198 | Not Available | Positive | 201135 - 201293 | 5945.5 |
| pp_00190 | BACCOPRO_00199 | Not Available | Negative | 201380 - 202747 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


