Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribulokinase/uridine kinase family protein | BACCOPRO_01980 | Not Available | Positive | 1913329 - 1914993 | 63792.2 |
| rna polymerase sigma-54 factor | BACCOPRO_01981 | Not Available | Positive | 1915137 - 1916615 | 56298.2 |
| hypothetical protein | BACCOPRO_01982 | Not Available | Positive | 1916623 - 1917303 | 25762.8 |
| glycine cleavage system h protein | BACCOPRO_01983 | Not Available | Positive | 1917337 - 1917717 | 14249.7 |
| phosphoribosylaminoimidazole carboxylase, catalytic subunit | BACCOPRO_01984 | Not Available | Positive | 1917739 - 1918248 | 17722.0 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | BACCOPRO_01985 | Not Available | Positive | 1918248 - 1920104 | 68617.1 |
| peptidase, s41 family | BACCOPRO_01986 | Not Available | Negative | 1920252 - 1921952 | 63110.5 |
| kinase, pfkb family | BACCOPRO_01987 | Not Available | Negative | 1921997 - 1922983 | 35599.9 |
| Trna-asn | Not Available | Not Available | Positive | 1923064 - 1923137 | Not Available |
| Trna-asn | Not Available | Not Available | Positive | 1923164 - 1923240 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


