Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01970 | Not Available | Positive | 1904472 - 1904615 | 5817.41 |
| hypothetical protein | BACCOPRO_01971 | Not Available | Positive | 1904648 - 1905098 | 17251.3 |
| hypothetical protein | BACCOPRO_01972 | Not Available | Positive | 1905100 - 1906899 | 67477.1 |
| acyl-coa thioester hydrolase, ybgc/ybaw family | BACCOPRO_01973 | Not Available | Negative | 1906991 - 1907434 | 16802.2 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | BACCOPRO_01974 | Not Available | Positive | 1907495 - 1908841 | 49577.3 |
| rubredoxin | BACCOPRO_01975 | Not Available | Negative | 1908905 - 1909069 | 5950.9 |
| transcriptional regulator, sir2 family | BACCOPRO_01976 | Not Available | Negative | 1909136 - 1909843 | 26062.2 |
| peptidyl-prolyl cis-trans isomerase, fkbp-type | BACCOPRO_01977 | Not Available | Positive | 1909846 - 1910559 | 26578.3 |
| peptidyl-prolyl cis-trans isomerase, fkbp-type | BACCOPRO_01978 | Not Available | Positive | 1910584 - 1911435 | 30766.8 |
| na/pi-cotransporter ii-like protein | BACCOPRO_01979 | Not Available | Negative | 1911543 - 1913237 | 63257.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


