Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase i | BACCOPRO_01960 | Not Available | Negative | 1892896 - 1895229 | 87897.1 |
| hypothetical protein | BACCOPRO_01961 | Not Available | Positive | 1895236 - 1895436 | 7794.74 |
| hypothetical protein | BACCOPRO_01962 | Not Available | Negative | 1895420 - 1897093 | 63103.2 |
| tetratricopeptide repeat protein | BACCOPRO_01963 | Not Available | Negative | 1897098 - 1900112 | 114543.0 |
| hydrolase, nudix family | BACCOPRO_01964 | Not Available | Negative | 1900160 - 1900693 | 20271.1 |
| transcriptional regulator, asnc family | BACCOPRO_01965 | Not Available | Positive | 1900883 - 1901350 | 17403.2 |
| hypothetical protein | BACCOPRO_01966 | Not Available | Positive | 1901347 - 1901688 | 13139.2 |
| linear amide c-n hydrolase, choloylglycine hydrolase family protein | BACCOPRO_01968 | Not Available | Negative | 1901783 - 1902928 | 42224.5 |
| hypothetical protein | BACCOPRO_01967 | Not Available | Positive | 1902896 - 1903021 | 4543.52 |
| alcohol dehydrogenase, iron-dependent | BACCOPRO_01969 | Not Available | Positive | 1903129 - 1904301 | 42747.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


