Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01950 | Not Available | Negative | 1882788 - 1884269 | 56138.8 |
| glycosyl hydrolase family 20, catalytic domain protein | BACCOPRO_01951 | Not Available | Negative | 1884266 - 1886485 | 83416.8 |
| hypothetical protein | BACCOPRO_01952 | Not Available | Positive | 1886618 - 1887034 | 15501.7 |
| hypothetical protein | BACCOPRO_01953 | Not Available | Negative | 1887083 - 1887568 | 18627.5 |
| hypothetical protein | BACCOPRO_01954 | Not Available | Negative | 1887602 - 1888306 | 26788.9 |
| hypothetical protein | BACCOPRO_01955 | Not Available | Negative | 1888494 - 1888958 | 18038.8 |
| sigma-70 region 2 | BACCOPRO_01956 | Not Available | Negative | 1888948 - 1889457 | 20161.2 |
| acetylglutamate kinase | BACCOPRO_01957 | Not Available | Negative | 1889528 - 1890304 | 27447.4 |
| arginine 2-monooxygenase | BACCOPRO_01958 | Not Available | Negative | 1890410 - 1892302 | 71564.1 |
| shikimate kinase | BACCOPRO_01959 | Not Available | Negative | 1892345 - 1892899 | 20822.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


