Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01939 | Not Available | Positive | 1872066 - 1872188 | 4478.5 |
| translation initiation factor if-2 | BACCOPRO_01941 | Not Available | Negative | 1872185 - 1875157 | 109395.0 |
| transcription termination factor nusa | BACCOPRO_01942 | Not Available | Negative | 1875260 - 1876516 | 47427.5 |
| hypothetical protein | BACCOPRO_01943 | Not Available | Negative | 1876520 - 1876987 | 17994.2 |
| transglycosylase | BACCOPRO_01944 | Not Available | Positive | 1877212 - 1879143 | 73330.5 |
| secondary thiamine-phosphate synthase enzyme | BACCOPRO_01945 | Not Available | Negative | 1879130 - 1879543 | 15626.8 |
| glycosyl hydrolase, family 31 | BACCOPRO_01947 | Not Available | Negative | 1879624 - 1881570 | 73901.8 |
| hypothetical protein | BACCOPRO_01946 | Not Available | Positive | 1881565 - 1881945 | 14509.8 |
| hypothetical protein | BACCOPRO_01948 | Not Available | Negative | 1882027 - 1882248 | 8360.15 |
| hypothetical protein | BACCOPRO_01949 | Not Available | Negative | 1882258 - 1882698 | 17288.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


