Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative 4-alpha-glucanotransferase | BACCOPRO_01920 | Not Available | Positive | 1846900 - 1849620 | 106050.0 |
| hypothetical protein | BACCOPRO_01922 | Not Available | Negative | 1849599 - 1849730 | 4578.61 |
| hypothetical protein | BACCOPRO_01921 | Not Available | Positive | 1849719 - 1849841 | 4346.24 |
| hypothetical protein | BACCOPRO_01923 | Not Available | Negative | 1849919 - 1851565 | 64549.0 |
| alpha amylase, catalytic domain protein | BACCOPRO_01924 | Not Available | Positive | 1851756 - 1853630 | 71385.5 |
| hypothetical protein | BACCOPRO_01925 | Not Available | Positive | 1853741 - 1855921 | 82800.4 |
| tonb-linked outer membrane protein, susc/raga family | BACCOPRO_01926 | Not Available | Positive | 1856010 - 1858991 | 109659.0 |
| susd family protein | BACCOPRO_01927 | Not Available | Positive | 1859023 - 1860690 | 62764.0 |
| hypothetical protein | BACCOPRO_01928 | Not Available | Positive | 1860778 - 1860948 | 6338.01 |
| hypothetical protein | BACCOPRO_01929 | Not Available | Positive | 1860932 - 1862203 | 47043.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


