Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01890 | Not Available | Negative | 1815390 - 1816340 | 34685.4 |
| hypothetical protein | BACCOPRO_01892 | Not Available | Negative | 1816358 - 1816480 | 5043.22 |
| alkaline phosphatase family protein | BACCOPRO_01891 | Not Available | Positive | 1816460 - 1817902 | 52773.4 |
| hypothetical protein | BACCOPRO_01893 | Not Available | Negative | 1817906 - 1818811 | 35086.7 |
| sodium:neurotransmitter symporter family protein | BACCOPRO_01894 | Not Available | Negative | 1818822 - 1820192 | 49192.1 |
| hypothetical protein | BACCOPRO_01895 | Not Available | Positive | 1820280 - 1820678 | 15401.1 |
| sigma-70 region 2 | BACCOPRO_01896 | Not Available | Negative | 1820997 - 1821500 | 19782.6 |
| adenylate cyclase | BACCOPRO_01897 | Not Available | Negative | 1821658 - 1822128 | 18197.4 |
| hypothetical protein | BACCOPRO_01898 | Not Available | Negative | 1822233 - 1822427 | 7276.2 |
| putative peptide chain release factor 2 | BACCOPRO_01899 | Not Available | Negative | 1822443 - 1823558 | 42691.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


