Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uba/ts-n domain protein | BACCOPRO_01860 | Not Available | Negative | 1786474 - 1786961 | 17337.9 |
| ribosomal protein s2 | BACCOPRO_01861 | Not Available | Negative | 1787092 - 1787931 | 30573.1 |
| ribosomal protein s9 | BACCOPRO_01862 | Not Available | Negative | 1788123 - 1788509 | 14551.9 |
| ribosomal protein l13 | BACCOPRO_01863 | Not Available | Negative | 1788516 - 1789013 | 18391.7 |
| hypothetical protein | BACCOPRO_01864 | Not Available | Positive | 1789209 - 1789343 | 5159.13 |
| hypothetical protein | BACCOPRO_01865 | Not Available | Negative | 1789333 - 1789821 | 18205.2 |
| asparagine--trna ligase | BACCOPRO_01866 | Not Available | Negative | 1790014 - 1791417 | 53574.2 |
| pseudouridylate synthase | BACCOPRO_01867 | Not Available | Negative | 1791513 - 1792274 | 28816.7 |
| hypothetical protein | BACCOPRO_01868 | Not Available | Negative | 1792271 - 1792729 | 16765.9 |
| adenylosuccinate lyase | BACCOPRO_01869 | Not Available | Negative | 1792833 - 1794182 | 51063.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


