Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01800 | Not Available | Negative | 1734866 - 1735034 | 6662.74 |
| hypothetical protein | BACCOPRO_01801 | Not Available | Negative | 1735509 - 1737059 | 59514.6 |
| phage integrase sam-like domain protein | BACCOPRO_01802 | Not Available | Negative | 1737480 - 1738502 | 39716.6 |
| site-specific recombinase, phage integrase family | BACCOPRO_01803 | Not Available | Negative | 1738525 - 1739514 | 38367.7 |
| site-specific recombinase, phage integrase family | BACCOPRO_01804 | Not Available | Negative | 1739495 - 1740751 | 49032.6 |
| hypothetical protein | BACCOPRO_01805 | Not Available | Positive | 1741007 - 1741171 | 6380.96 |
| hypothetical protein | BACCOPRO_01806 | Not Available | Negative | 1741545 - 1741859 | 12050.6 |
| hypothetical protein | BACCOPRO_01807 | Not Available | Negative | 1741907 - 1742155 | 9427.02 |
| hypothetical protein | BACCOPRO_01808 | Not Available | Negative | 1742152 - 1742370 | 8372.97 |
| hypothetical protein | BACCOPRO_01809 | Not Available | Negative | 1742402 - 1742659 | 10316.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


