Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01740 | Not Available | Negative | 1694206 - 1695847 | 62953.2 |
| hypothetical protein | BACCOPRO_01741 | Not Available | Negative | 1695848 - 1697117 | 47468.0 |
| site-specific recombinase, phage integrase family | BACCOPRO_01742 | Not Available | Positive | 1697118 - 1698287 | 45522.7 |
| hypothetical protein | BACCOPRO_01743 | Not Available | Positive | 1698297 - 1699769 | 57514.3 |
| hypothetical protein | BACCOPRO_01744 | Not Available | Positive | 1699870 - 1700649 | 30455.5 |
| dna binding domain, excisionase family | BACCOPRO_01745 | Not Available | Positive | 1700802 - 1701215 | 15919.3 |
| dna binding domain, excisionase family | BACCOPRO_01746 | Not Available | Positive | 1701202 - 1701648 | 17463.2 |
| hypothetical protein | BACCOPRO_01747 | Not Available | Positive | 1701645 - 1702715 | 40715.7 |
| hypothetical protein | BACCOPRO_01748 | Not Available | Positive | 1702776 - 1703672 | 34804.9 |
| hypothetical protein | BACCOPRO_01749 | Not Available | Positive | 1703900 - 1704349 | 16879.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


