Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative phosphonate catabolism associated alcohol dehydrogenase | BACCOPRO_01690 | Not Available | Negative | 1649800 - 1650861 | 38336.1 |
| hypothetical protein | BACCOPRO_01691 | Not Available | Positive | 1651040 - 1651960 | 34496.7 |
| hypothetical protein | BACCOPRO_01692 | Not Available | Negative | 1652047 - 1652541 | 18290.8 |
| hypothetical protein | BACCOPRO_01693 | Not Available | Positive | 1652605 - 1652748 | 5341.7 |
| phosphoserine phosphatase serb | BACCOPRO_01694 | Not Available | Positive | 1652869 - 1654101 | 46103.2 |
| dead/deah box helicase | BACCOPRO_01695 | Not Available | Positive | 1654131 - 1655402 | 47103.9 |
| hypothetical protein | BACCOPRO_01696 | Not Available | Negative | 1655461 - 1656285 | 31028.1 |
| nucleotide sugar dehydrogenase | BACCOPRO_01697 | Not Available | Negative | 1656282 - 1657595 | 48385.9 |
| sporulation and cell division repeat protein | BACCOPRO_01698 | Not Available | Positive | 1657711 - 1658868 | 42618.1 |
| fha domain protein | BACCOPRO_01699 | Not Available | Positive | 1658892 - 1659440 | 20690.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


