Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative 8-amino-7-oxononanoate synthase | BACCOPRO_01680 | Not Available | Negative | 1638699 - 1639886 | 44264.2 |
| lipid kinase, yegs/rv2252/bmru family | BACCOPRO_01681 | Not Available | Positive | 1640097 - 1641131 | 37879.7 |
| methyltransferase domain protein | BACCOPRO_01683 | Not Available | Negative | 1641145 - 1641858 | 26674.1 |
| hypothetical protein | BACCOPRO_01682 | Not Available | Positive | 1641814 - 1641948 | 5259.7 |
| endopeptidase la | BACCOPRO_01684 | Not Available | Positive | 1641965 - 1644544 | 97097.9 |
| pp_01647 | BACCOPRO_01685 | Not Available | Positive | 1644492 - 1645676 | Not Available |
| permease, yjgp/yjgq family | BACCOPRO_01686 | Not Available | Positive | 1645714 - 1646823 | 42911.9 |
| hypothetical protein | BACCOPRO_01687 | Not Available | Positive | 1646990 - 1647124 | 5036.0 |
| pqq enzyme repeat protein | BACCOPRO_01688 | Not Available | Negative | 1647103 - 1648923 | 66379.5 |
| hypothetical protein | BACCOPRO_01689 | Not Available | Negative | 1648866 - 1649780 | 33766.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


