Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhs repeat-associated core domain protein | BACCOPRO_01640 | Not Available | Negative | 1605524 - 1607452 | 74458.0 |
| yd repeat protein (3 repeats) | BACCOPRO_01641 | Not Available | Negative | 1607524 - 1609887 | 85512.2 |
| hypothetical protein | BACCOPRO_01642 | Not Available | Negative | 1609914 - 1610198 | 10951.6 |
| hypothetical protein | BACCOPRO_01643 | Not Available | Negative | 1610149 - 1610982 | 31534.1 |
| hypothetical protein | BACCOPRO_01644 | Not Available | Negative | 1610983 - 1611549 | 21776.8 |
| rhs element vgr protein | BACCOPRO_01645 | Not Available | Negative | 1611553 - 1613322 | 64481.8 |
| hypothetical protein | BACCOPRO_01646 | Not Available | Positive | 1613662 - 1614299 | 23945.9 |
| hypothetical protein | BACCOPRO_01647 | Not Available | Negative | 1614300 - 1614465 | 6840.62 |
| hypothetical protein | BACCOPRO_01648 | Not Available | Positive | 1614626 - 1615111 | 18410.7 |
| is66 family element, transposase | BACCOPRO_01649 | Not Available | Negative | 1615212 - 1616768 | 60816.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


