Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | BACCOPRO_00150 | Not Available | Positive | 154100 - 154591 | 18188.1 |
| hypothetical protein | BACCOPRO_00151 | Not Available | Positive | 154593 - 155828 | 45929.3 |
| oxidoreductase, nad-binding domain protein | BACCOPRO_00152 | Not Available | Positive | 155905 - 157041 | 42460.2 |
| fe-s metabolism associated domain protein | BACCOPRO_00153 | Not Available | Negative | 157174 - 157602 | 16148.4 |
| peptidase, m28 family | BACCOPRO_00154 | Not Available | Negative | 157611 - 158702 | 40894.9 |
| renal dipeptidase family protein | BACCOPRO_00155 | Not Available | Negative | 158686 - 160452 | 65605.2 |
| phosphate acetyl/butyryl transferase | BACCOPRO_00156 | Not Available | Positive | 160534 - 161466 | 33791.2 |
| butyrate kinase | BACCOPRO_00157 | Not Available | Positive | 161457 - 162551 | 40027.1 |
| Trna-ser | Not Available | Not Available | Positive | 162679 - 162769 | Not Available |
| tigr00159 family protein | BACCOPRO_00159 | Not Available | Negative | 162871 - 163644 | 28804.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


