Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine biosynthesis protein thic | BACCOPRO_01560 | Not Available | Negative | 1547857 - 1549551 | 64054.5 |
| thiazole biosynthesis protein thig | BACCOPRO_01561 | Not Available | Negative | 1549591 - 1550367 | 27842.7 |
| thiamine-phosphate diphosphorylase | BACCOPRO_01562 | Not Available | Negative | 1550384 - 1551034 | 24198.3 |
| thiamine biosynthesis protein this | BACCOPRO_01563 | Not Available | Negative | 1551024 - 1551224 | 7088.62 |
| hypothetical protein | BACCOPRO_01564 | Not Available | Negative | 1551441 - 1551560 | 4455.37 |
| hypothetical protein | BACCOPRO_01565 | Not Available | Negative | 1551720 - 1552394 | 26392.8 |
| ser/thr phosphatase family protein | BACCOPRO_01566 | Not Available | Negative | 1552375 - 1553202 | 31691.6 |
| flavodoxin | BACCOPRO_01567 | Not Available | Positive | 1553376 - 1553882 | 17931.0 |
| hypothetical protein | BACCOPRO_01568 | Not Available | Positive | 1553879 - 1554247 | 14470.0 |
| hypothetical protein | BACCOPRO_01569 | Not Available | Positive | 1554351 - 1554719 | 13986.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


