Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative shikimate dehydrogenase | BACCOPRO_01520 | Not Available | Negative | 1512787 - 1513536 | 27924.8 |
| ubiquinone/menaquinone biosynthesis methyltransferase | BACCOPRO_01521 | Not Available | Negative | 1513548 - 1514285 | 27876.7 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | BACCOPRO_01522 | Not Available | Negative | 1514361 - 1515344 | 37551.1 |
| phoh family protein | BACCOPRO_01523 | Not Available | Negative | 1515316 - 1516269 | 35592.0 |
| hypothetical protein | BACCOPRO_01524 | Not Available | Negative | 1516314 - 1516445 | 5096.27 |
| Trna-ser | Not Available | Not Available | Positive | 1516511 - 1516597 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 1516617 - 1516689 | Not Available |
| Trna-ser | Not Available | Not Available | Positive | 1516696 - 1516785 | Not Available |
| hypothetical protein | BACCOPRO_01528 | Not Available | Negative | 1516921 - 1517040 | 4650.71 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_01529 | Not Available | Positive | 1517197 - 1519488 | 86076.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


