Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antibiotic biosynthesis monooxygenase | BACCOPRO_01400 | Not Available | Positive | 1408347 - 1408622 | 10257.4 |
| hypothetical protein | BACCOPRO_01401 | Not Available | Positive | 1408777 - 1408941 | 6149.56 |
| rubredoxin | BACCOPRO_01402 | Not Available | Negative | 1408992 - 1409543 | 20795.7 |
| transcriptional regulator, fur family | BACCOPRO_01403 | Not Available | Negative | 1409593 - 1410009 | 15961.3 |
| nad+ synthase | BACCOPRO_01404 | Not Available | Positive | 1410281 - 1412212 | 71243.0 |
| hydrolase, nudix family | BACCOPRO_01405 | Not Available | Negative | 1412213 - 1412998 | 29479.5 |
| tex-like protein n-terminal domain protein | BACCOPRO_01406 | Not Available | Negative | 1413031 - 1415163 | 79771.5 |
| acetyltransferase, gnat family | BACCOPRO_01407 | Not Available | Negative | 1415215 - 1415703 | 18150.6 |
| hypothetical protein | BACCOPRO_01408 | Not Available | Negative | 1415947 - 1416237 | 11430.7 |
| dnaj domain protein | BACCOPRO_01409 | Not Available | Negative | 1416256 - 1417194 | 34507.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


