Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_00130 | Not Available | Positive | 130915 - 131880 | 37217.3 |
| hypothetical protein | BACCOPRO_00131 | Not Available | Positive | 131904 - 132104 | 7254.83 |
| dna mismatch repair protein muts | BACCOPRO_00132 | Not Available | Negative | 132344 - 134980 | 99263.8 |
| site-specific recombinase, phage integrase family | BACCOPRO_00133 | Not Available | Positive | 135295 - 136653 | 52455.1 |
| hypothetical protein | BACCOPRO_00134 | Not Available | Positive | 136706 - 137386 | 25361.0 |
| hypothetical protein | BACCOPRO_00135 | Not Available | Positive | 137647 - 137976 | 12959.6 |
| hypothetical protein | BACCOPRO_00136 | Not Available | Positive | 137969 - 139468 | 57185.4 |
| hypothetical protein | BACCOPRO_00137 | Not Available | Positive | 139465 - 139677 | 7627.81 |
| hypothetical protein | BACCOPRO_00138 | Not Available | Positive | 139866 - 140489 | 23435.2 |
| putative plasmid recombination enzyme | BACCOPRO_00139 | Not Available | Positive | 140640 - 142190 | 59808.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


