Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain protein | BACCOPRO_01370 | Not Available | Negative | 1381180 - 1381629 | 16266.3 |
| hypothetical protein | BACCOPRO_01372 | Not Available | Negative | 1381733 - 1382509 | 29102.9 |
| hypothetical protein | BACCOPRO_01371 | Not Available | Positive | 1382363 - 1382839 | 18104.0 |
| hypothetical protein | BACCOPRO_01373 | Not Available | Positive | 1382978 - 1383100 | 4609.55 |
| hypothetical protein | BACCOPRO_01374 | Not Available | Positive | 1383113 - 1384015 | 35029.1 |
| hypothetical protein | BACCOPRO_01375 | Not Available | Positive | 1384017 - 1384700 | 25907.4 |
| hypothetical protein | BACCOPRO_01376 | Not Available | Positive | 1384697 - 1385044 | 13470.0 |
| hypothetical protein | BACCOPRO_01377 | Not Available | Positive | 1385041 - 1385265 | 8477.11 |
| hypothetical protein | BACCOPRO_01378 | Not Available | Positive | 1385281 - 1385835 | 20552.9 |
| nicotinate phosphoribosyltransferase | BACCOPRO_01379 | Not Available | Positive | 1385832 - 1387034 | 46142.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


