Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-6 dna methylase | BACCOPRO_01350 | Not Available | Negative | 1365767 - 1367815 | 76974.9 |
| dna-binding helix-turn-helix protein | BACCOPRO_01351 | Not Available | Negative | 1367817 - 1368029 | 7982.73 |
| relaxase/mobilization nuclease domain protein | BACCOPRO_01352 | Not Available | Negative | 1368127 - 1369047 | 35144.2 |
| bacterial mobilization protein mobc | BACCOPRO_01353 | Not Available | Negative | 1369044 - 1369409 | 13886.8 |
| hypothetical protein | BACCOPRO_01354 | Not Available | Negative | 1369611 - 1369785 | 6852.46 |
| hypothetical protein | BACCOPRO_01355 | Not Available | Positive | 1370266 - 1370577 | 12638.2 |
| dna binding domain, excisionase family | BACCOPRO_01356 | Not Available | Positive | 1370611 - 1370913 | 11764.1 |
| hypothetical protein | BACCOPRO_01357 | Not Available | Negative | 1371070 - 1371444 | 14416.9 |
| site-specific recombinase, phage integrase family | BACCOPRO_01358 | Not Available | Negative | 1371448 - 1372680 | 47340.9 |
| hypothetical protein | BACCOPRO_01359 | Not Available | Negative | 1372694 - 1372819 | 4762.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


